Submitted by YAN Chao-Gan on Fri, 11/02/2012 - 11:02
Hi all,
Besides the information provided in the Courses, there were still lots of questions about resting-state fMRI data processing. Here we'd like to build a FAQ section for your convenience. However, the FAQ is just started and will be developed gradually.
Best,
Chao-Gan
1. What are the toolboxes needed for REST/DPARSF?
A: REST/DPARSF works well with MATLAB and Statistics Toolbox, Image Processing Toolbox and Signal Processing Toolbox. In addition, Parallel Computing Toolbox is needed if the users want to process multiple subjects in parallel computing mode.
2. How to solve the problem of “out of memory”?
A: Please refer to http://www.restfmri.net/forum/Course#comment-168
3. What’s the ROI information of the templates provided in DPARSF?
A: Please refer to http://www.restfmri.net/forum/node/1210#comment-1911
4. Why the data after nuisance regression looks so strange (distorted)?
A: Please refer to http://www.restfmri.net/forum/node/1207#comment-1906
5. How to compare a single case with a group of controls?
A: Please refer to http://www.restfmri.net/forum/node/1165
6. Does the part "Reorienting T1 Image Interactively for XXX" require any input from the user?
A: Please refer to http://www.restfmri.net/forum/node/1082
7. Why the p values in REST Slice Viewer differ from xjview?
A: Please refer to http://www.restfmri.net/forum/node/1115
8. What’s the input for smoothness estimation?
A: Please refer to http://www.restfmri.net/forum/node/1118
9. What’s the option of “IsTwoTailed” in GRF correction?
A: Please refer to http://www.restfmri.net/forum/node/1126
10. How to convert from voxel index to MNI coordinates and vice versa?
A: Please refer to http://www.restfmri.net/forum/node/1300
11. Why linear trend should be removed before filtering?
A: Please refer to http://www.restfmri.net/forum/node/1515
A: Please refer to http://www.restfmri.net/forum/node/1300
11. Why linear trend should be removed before filtering?
A: Please refer to http://www.restfmri.net/forum/node/1515
Submitted by sugar on Sat, 07/20/2019 - 03:53 Permalink
7.0 Tesla rest stating fMRI data processing
Could the Rest and Dparsfa work on the 7.0 Tesla rest stating fMRI data?
Looking forward to your reply and thanks a lot.
Submitted by Leire on Mon, 09/07/2020 - 19:07 Permalink
Re: Frequently Asked Questions (FAQ)
Dear all,
I got an error trying to run the pipeline for ALFF calculation. I can't figure out why I'm getting it. Any help will be appreciated. The error is the following:
Error message
-------------
Error using infodr_ChekImgTyp (line 26)
Img Amount or Type is error!
Error in indir_Chek>Subfolder1st_chekImgType (line 65)
[ImgType,ImgExt]=infodr_ChekImgTyp(FirstSubfolderPath);
Error in indir_Chek>Subfodr_TypeChek (line 25)
[Subfolder1st_ImgType,Subfolder1st_ImgExt]=Subfolder1st_chekImgType(InDir);
Error in indir_Chek (line 9)
Subfodr_TypeChek(InDir);
Error in indir_RmFirstTimePoints (line 12)
[ImgType,ImgExt]=indir_Chek(InDir);
Error in pipeline_kernel>run_RemoveFirstTimePoints (line 273)
indir_RmFirstTimePoints(indir_FunImg,outdir_FunImg,TimePointsAmount);
Error in pipeline_kernel (line 193)
run_RemoveFirstTimePoints(InputParameter);
Error in pipeline_batch (line 19)
pipeline_kernel(OperationList{i},InputParameter);
Error in call_pipeline_batch (line 14)
pipeline_batch(ProcessQueue,InputParameter);
Error in pipeline_run_pushbutton_callback (line 24)
call_pipeline_batch(ProcessQueue,InputParameter,handles);
Error in run_BVersionCallback (line 64)
pipeline_run_pushbutton_callback(CB_value);
Error in repipl>UIcontrolDisplaySet_callback (line 90)
run_BVersionCallback('GUIparaVisible',...
Best,
L-