Submitted by ANDY_NSMC on Sun, 04/21/2013 - 23:17
首先谢谢老师分享您的研究成果!我是个初学者,因为看了老是的软件介绍才打算做静息态相关的研究!但是运行没有成功过。
我的环境是windows xp sp2 64bit/windows xp sp3/matlab2012b/2010b rest1.8 DPARSF 2.2_130224 ;
LINUX UBUNTU12.04 64BIT/matlab2010b rest1.8 DPARSF 2.2_130224
下面是任务记录:
Welcome: Administrator, 2013-04-21 22:42
Data Processing Assistant for Resting-State fMRI (DPARSF) Advanced Edition (alias: DPARSFA).
Release=V2.2_130224
Copyright(c) 2009~2013
The Nathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962; Child Mind Institute, 445 Park Avenue, New York, NY 10022; The Phyllis Green and Randolph Cowen Institute for Pediatric Neuroscience, New York University Child Study Center, New York, NY 10016
State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, China
Mail to Author: YAN Chao-Gan
http://www.restfmri.net
-----------------------------------------------------------
Citing Information:
If you think DPARSFA is useful for your work, citing it in your paper would be greatly appreciated.
Something like "... The preprocessing was carried out by using Data Processing Assistant for Resting-State fMRI (DPARSF) (Yan & Zang, 2010, http://www.restfmri.net) which is based on Statistical Parametric Mapping (SPM8) (http://www.fil.ion.ucl.ac.uk/spm) and Resting-State fMRI Data Analysis Toolkit (REST, Song et al., 2011. http://www.restfmri.net)..."
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013; Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
>> DPARSF
Welcome: Administrator, 2013-04-21 22:42
Data Processing Assistant for Resting-State fMRI (DPARSF) Advanced Edition (alias: DPARSFA).
Release=V2.2_130224
Copyright(c) 2009~2013
The Nathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962; Child Mind Institute, 445 Park Avenue, New York, NY 10022; The Phyllis Green and Randolph Cowen Institute for Pediatric Neuroscience, New York University Child Study Center, New York, NY 10016
State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, China
Mail to Author: YAN Chao-Gan
http://www.restfmri.net
-----------------------------------------------------------
Citing Information:
If you think DPARSFA is useful for your work, citing it in your paper would be greatly appreciated.
Something like "... The preprocessing was carried out by using Data Processing Assistant for Resting-State fMRI (DPARSF) (Yan & Zang, 2010, http://www.restfmri.net) which is based on Statistical Parametric Mapping (SPM8) (http://www.fil.ion.ucl.ac.uk/spm) and Resting-State fMRI Data Analysis Toolkit (REST, Song et al., 2011. http://www.restfmri.net)..."
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013; Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
>> DPARSF
Welcome: Administrator, 2013-04-21 22:43
Data Processing Assistant for Resting-State fMRI (DPARSF) Basic Edition.
Release=V2.2_130224
Copyright(c) 2009~2013
State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, China
The Nathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962; Child Mind Institute, 445 Park Avenue, New York, NY 10022; The Phyllis Green and Randolph Cowen Institute for Pediatric Neuroscience, New York University Child Study Center, New York, NY 10016
Mail to Author: YAN Chao-Gan
http://www.restfmri.net
-----------------------------------------------------------
Citing Information:
If you think DPARSF is useful for your work, citing it in your paper would be greatly appreciated.
Something like "... The preprocessing was carried out by using Data Processing Assistant for Resting-State fMRI (DPARSF) (Yan & Zang, 2010, http://www.restfmri.net) which is based on Statistical Parametric Mapping (SPM8) (http://www.fil.ion.ucl.ac.uk/spm) and Resting-State fMRI Data Analysis Toolkit (REST, Song et al., 2011. http://www.restfmri.net)..."
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013; Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file D:\mrisoft\DPARSF\dcm2nii\dcm2nii.ini
reading preferences file DCM2NII.INI
Validating 6600 potential DICOM images.
Found 6600 DICOM images.
Converting 6600/6600 200
ANKE1.DCM->20130409_161155Head32CHF96DTI30XUJIs010a1001.img
Number of diffusion directions = 200
Time elapsed 26484ms
Converting Functional Images:Sub_001 OK
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file D:\mrisoft\DPARSF\dcm2nii\dcm2nii.ini
reading preferences file DCM2NII.INI
Validating 140 potential DICOM images.
dcm Error: not a DICOM image: F:\Analysis\T1Raw\Sub_001\co20130409_161155Head32CHF96DTI30s008a1001.img
dcm Error: not a DICOM image: F:\Analysis\T1Raw\Sub_001\o20130409_161155Head32CHF96DTI30s008a1001.img
Found 136 DICOM images.
Converting 136/136 1
ANKE1.DCM->20130409_161155Head32CHF96DTI30XUJIs008a1001.img
Reorienting as F:\ANALYSIS\T1IMG\SUB_001\o20130409_161155Head32CHF96DTI30XUJIs008a1001.hdr
Cropping NIfTI/Analyze image F:\ANALYSIS\T1IMG\SUB_001\o20130409_161155Head32CHF96DTI30XUJIs008a1001.hdr
Time elapsed 4359ms
Converting T1 Images:Sub_001 OK
Removing First 10Time Points:Sub_001 OK
Slice Timing Setup:Sub_001 OK
Warning: Run spm_jobman('initcfg'); beforehand
> In spm_jobman at 107
In DPARSF_run at 351
In DPARSF>pushbuttonRun_Callback at 993
In gui_mainfcn at 96
In DPARSF at 46
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Slice Timing'
SPM8: spm_slice_timing (v4310) 22:46:41 - 21/04/2013
========================================================================
Your TR is 2.0
Done 'Slice Timing'
Done
Realign Setup:Sub_001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Realign: Estimate & Reslice'
Done 'Realign: Estimate & Reslice'
Done
Moving Realign Parameters:Sub_001 OK
Copying T1 image Files:Sub_001 OK
Normalize-Coregister Setup:Sub_001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Coregister: Estimate'
iteration 1...
-0.2335 0 0 0 0 0 | -1.0605
-0.2335 0.7841 0 0 0 0 | -1.0606
-0.2335 0.7841 -0.539 0 0 0 | -1.0607
-0.2335 0.7841 -0.539 0 0 0 | -1.0607
-0.2335 0.7841 -0.539 0 0.004629 0 | -1.0607
-0.2335 0.7841 -0.539 0 0.004629 -0.004047 | -1.0607
iteration 2...
-0.2264 0.7841 -0.539 0 0.004629 -0.004047 | -1.0607
-0.2264 0.7841 -0.539 0 0.004629 -0.004047 | -1.0607
-0.2264 0.7841 -0.539 0 0.004629 -0.004047 | -1.0607
-0.2264 0.7841 -0.539 -0.0005485 0.004629 -0.004047 | -1.0607
-0.2264 0.7841 -0.539 -0.0005485 0.004629 -0.004047 | -1.0607
-0.2264 0.7841 -0.539 -0.0005485 0.004629 -0.004138 | -1.0607
iteration 1...
-0.04671 0.7841 -0.539 -0.0005485 0.004629 -0.004138 | -1.0604
-0.04671 0.4516 -0.539 -0.0005485 0.004629 -0.004138 | -1.0605
-0.04671 0.4516 -1.186 -0.0005485 0.004629 -0.004138 | -1.0605
-0.04671 0.4516 -1.186 0.006278 0.004629 -0.004138 | -1.0605
-0.04671 0.4516 -1.186 0.006278 0.004629 -0.004138 | -1.0605
-0.04671 0.4516 -1.186 0.006278 0.004629 -0.01086 | -1.0605
iteration 2...
0.01008 0.4516 -1.186 0.006278 0.004629 -0.01086 | -1.0605
0.01008 0.5781 -1.186 0.006278 0.004629 -0.01086 | -1.0605
0.01008 0.5781 -0.8163 0.006278 0.004629 -0.01086 | -1.0605
0.01008 0.5781 -0.8163 0.00916 0.004629 -0.01086 | -1.0605
0.01008 0.5781 -0.8163 0.00916 0.004629 -0.01086 | -1.0605
0.01008 0.5781 -0.8163 0.00916 0.004629 -0.01086 | -1.0605
iteration 3...
0.03291 0.5781 -0.8163 0.00916 0.004629 -0.01086 | -1.0605
0.03291 0.5125 -0.8163 0.00916 0.004629 -0.01086 | -1.0605
0.03291 0.5125 -0.7435 0.00916 0.004629 -0.01086 | -1.0605
0.03291 0.5125 -0.7435 0.009908 0.004629 -0.01086 | -1.0605
0.03291 0.5125 -0.7435 0.009908 0.004629 -0.01086 | -1.0605
0.03291 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
iteration 4...
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
0.02912 0.5125 -0.7435 0.009908 0.004629 -0.01032 | -1.0605
Done 'Coregister: Estimate'
Done
Normalize-Segment Setup:Sub_001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Segment'
Done 'Segment'
Done
Normalize-Write Setup:Sub_001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Normalise: Write'
Done 'Normalise: Write'
Done
Moving Normalized Files:Sub_001 OK
Generating the pictures for checking normalization: Sub_001 OK
Warning: Escape sequence 'A' is not valid. See 'help sprintf' for valid escape sequences.
> In rest_detrend at 24
In DPARSF_run at 979
In DPARSF>pushbuttonRun_Callback at 993
In gui_mainfcn at 96
In DPARSF at 46
Removing the linear trend: F:
Read 3D EPI functional images: "F:\Analysis\FunImgNormalized\Sub_001".......................................
Detrend working. Wait.............
Saving detrended images. Wait...
Detrend over.
Elapsed time is 23.224556 seconds.
Moving Dtrended Files:Sub_001 OK
Ideal rectangular filter: "F:\Analysis\FunImgNormalizedDetrended\Sub_001"
Read 3D EPI functional images: "F:\Analysis\FunImgNormalizedDetrended\Sub_001".
Load mask "".
Band Pass Filter working. Wait.............
Saving filtered images. Wait...
Band pass filter over.
Elapsed time is 20.845787 seconds.
Moving Filtered Files:Sub_001 OK
Read these 3D EPI functional images. wait...
Read 3D EPI functional images: "F:\Analysis\FunImgNormalizedDetrendedFiltered\Sub_001".
Rank calculating.............
Calculate the kcc on voxel by voxel for the data set............................................................ The reho of the data set was finished.
Regional Homogeneity computation over, elapsed time: 29.5625 seconds
Error using rest_readfile (line 61)
File doesn't exist: Default.hdr
Error in DPARSF_run (line 1049)
BrainMaskData = rest_readfile(AutoDataProcessParameter.CalReHo.AMaskFilename);
Error in DPARSF>pushbuttonRun_Callback (line 993)
[Error]=DPARSF_run(handles.Cfg);
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in DPARSF (line 46)
gui_mainfcn(gui_State, varargin{:});
Error while evaluating uicontrol Callback
Submitted by ANDY_NSMC on Sun, 04/21/2013 - 23:23 Permalink
Re: DPARSF老是报错和警报
Submitted by YAN Chao-Gan on Fri, 04/26/2013 - 17:22 Permalink
Re: DPARSF老是报错和警报
更新DPARSF