各位老师们好,我在使用DPARSF过程中 有以下几个地方不明白,希望老师们能帮我解惑。
问题1,我在预处理时没有勾选 Extracting ROI time courses这几项,可是计算完fALFF后该Regress out nuisance covariates 时 就总报下列错误:(DPARSF设置如附件1所示)
Read 3D EPI functional images: "E:\Analysis\FunImgNormalizedSmoothedDetrendedFiltered\Sub_001".
ROI time courses retrieving through "D:\DPARSF_V2.0_110505\Templates\BrainMask_05_61x73x61.img".
ROI time courses retrieving through "D:\DPARSF_V2.0_110505\Templates\CsfMask_07_61x73x61.img".
ROI time courses retrieving through "D:\DPARSF_V2.0_110505\Templates\WhiteMask_09_61x73x61.img".
Extracting ROI time courses over, elapsed time: 6.95764 seconds.
??? Error using ==> horzcat
CAT arguments dimensions are not consistent.
Error in ==> DPARSF_run at 925
Covariables=[Covariables,theROITimeCourses];
Error in ==> DPARSF>pushbuttonRun_Callback at 939
[Error]=DPARSF_run(handles.Cfg);
Error in ==> gui_mainfcn at 96
feval(varargin{:});
Error in ==> DPARSF at 41
gui_mainfcn(gui_State, varargin{:});
??? Error while evaluating uicontrol Callback
问题2,DPARSF在运行ReHo时 是默认的先ReHo后smooth吗?为什么我不管是点上smooth还是不点smooth 总是出如下错误:(这个错是在不点smooth 并点上data without smooth情况下运行的错误,设置界面见附件2。我把smooth点上还点上data without smooth 还是出同样的错误。)
Running 'Smooth'
Failed 'Smooth'
Error using ==> spm_vol>subfunc at 101
File "E:\Analysis\Results\ReHo\mReHoMap_Sub_001.img" does not exist.
In file "D:\spm8\spm_vol.m" (v4045), function "subfunc" at line 101.
In file "D:\spm8\spm_vol.m" (v4045), function "subfunc1" at line 77.
In file "D:\spm8\spm_vol.m" (v4045), function "subfunc2" at line 69.
In file "D:\spm8\spm_vol.m" (v4045), function "spm_vol" at line 54.
In file "D:\spm8\spm_smooth.m" (v4172), function "spm_smooth" at line 33.
In file "D:\spm8\config\spm_run_smooth.m" (v3915), function "spm_run_smooth" at line 20.
The following modules did not run:
Failed: Smooth
??? Error using ==> cfg_util at 835
Job execution failed. The full log of this run can be found in MATLAB command window, starting with the
lines (look for the line showing the exact #job as displayed in this error message)
------------------
Running job #3
------------------
Error in ==> spm_jobman at 217
Error in ==> DPARSF_run at 786
Error in ==> DPARSF>pushbuttonRun_Callback at 939
Error in ==> gui_mainfcn at 96
Error in ==> DPARSF at 41
??? Error while evaluating control Callback
问题3,进行功能连接时,Predefined ROI中的方法1(from statistical map by selecting cluster after thresholding )和方法4(from user defined mask file)分别怎么做?这4种方法都各自适用于哪些情况?
新手问的问题又多又渣,老师们见谅,期待你们的回复!
Submitted by gaolei6096 on Wed, 10/22/2014 - 14:33 Permalink
Re: 关于使用DPARSF的几个问题。
不好意思这么晚才回复,我觉得你不如这么试试:
1.把原有的DPARSF和REST都从Matlab的path里面remove掉,改用DPARSF2.3和REST1.8,(链接http://pub.restfmri.net/),然后找一篇最新的文献,按照上面的方法计算诸如ALFF,fALFF,及ReHo等,而且建议直接用DPARSFA来做;
2.或者直接用DPABI (http://rfmri.org/DPABI)计算,选择的参数和预处理次序也尽量参照最新的文献比较好一些。有问题或者报错可以直接贴上来。