DPARSF: DARTEL SMOOTHING AFTER SCRUBBING

I have the following problem with Dartel Smoothing.  

I Applied dartel Smoothing after i scrubbed all my images by Jenkinson with a threshold of 0.3 with cutting out the bad images. 
After Scrubbing i got the images with the displaced timepoints ARWCFB. I used this folder as starting directory for the Dartel Smoothing (8x8x8). 
The Output images of Dartel now include all images. It looks like the Dartel smoothing didnt use my Folder AWRCFB with the displaced timepoints as starting directory. Does someone know what went wrong?

Kind regards,

Jonas