Submitted by karencita_ramos on Fri, 06/17/2016 - 09:40
Hi,
I am new at using dpabi, so I am trying to use the multimedia course module part 1. However when I try to run the sample data after selecting choices as shown on the video, I obtained the following message on MATLAB:
Warning: File: DPARSFA_run.m Line: 680 Column: 66
The temporary variable SliceOrder will be cleared at the beginning of each iteration of
the parfor loop.
Any value assigned to it before the loop will be lost. If SliceOrder is used before it
is assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 935 Column: 83
The temporary variable RefFile will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If RefFile is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 2683 Column: 24
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 4389 Column: 32
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: Directory already exists.
> In DPARSFA_run>(parfor body) at 215
In parallel_function at 472
In DPARSFA_run at 213
In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.ini
reading preferences file DCM2NII.INI
0 C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.exe ERROR: unable to find 2016 STTP\ProcessingDemoData\FunImg\Sub_003 C:\Users\Hugo\Documents\Summer 2016 STTP\ProcessingDemoData\FunRaw\Sub_003\0000001.dcm
Either drag and drop or specify command line options:
dcm2nii <options> <sourcenames>
OPTIONS:
-a Anonymize [remove identifying information]: Y,N = Y
-b load settings from specified inifile, e.g. '-b C:\set\t1.ini'
-c Collapse input folders: Y,N = N
-d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y
-e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y
-f Source filename [e.g. filename.par -> filename.nii]: Y,N = N
-g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = N
-i ID in filename [filename.dcm -> johndoe.nii]: Y,N = Y
-n output .nii file [if no, create .hdr/.img pair]: Y,N = Y
-o Output Directory, e.g. 'C:\TEMP' (if unspecified, source directory is used)
-p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y
-r Reorient image to nearest orthogonal: Y,N
-s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N
-v Convert every image in the directory: Y,N = Y
-x Reorient and crop 3D NIfTI images: Y,N = N
You can also set defaults by editing DCM2NII.INI
EXAMPLE: dcm2nii -a y -o C:\TEMP C:\DICOM\input1.par CEDU>> dpabi
Would you please help me figure out what I am doing wrong?
Best regards,
Karen
Warning: File: DPARSFA_run.m Line: 680 Column: 66
The temporary variable SliceOrder will be cleared at the beginning of each iteration of
the parfor loop.
Any value assigned to it before the loop will be lost. If SliceOrder is used before it
is assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 935 Column: 83
The temporary variable RefFile will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If RefFile is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 2683 Column: 24
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 4389 Column: 32
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: Directory already exists.
> In DPARSFA_run>(parfor body) at 215
In parallel_function at 472
In DPARSFA_run at 213
In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.ini
reading preferences file DCM2NII.INI
0 C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.exe ERROR: unable to find 2016 STTP\ProcessingDemoData\FunImg\Sub_003 C:\Users\Hugo\Documents\Summer 2016 STTP\ProcessingDemoData\FunRaw\Sub_003\0000001.dcm
Either drag and drop or specify command line options:
dcm2nii <options> <sourcenames>
OPTIONS:
-a Anonymize [remove identifying information]: Y,N = Y
-b load settings from specified inifile, e.g. '-b C:\set\t1.ini'
-c Collapse input folders: Y,N = N
-d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y
-e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y
-f Source filename [e.g. filename.par -> filename.nii]: Y,N = N
-g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = N
-i ID in filename [filename.dcm -> johndoe.nii]: Y,N = Y
-n output .nii file [if no, create .hdr/.img pair]: Y,N = Y
-o Output Directory, e.g. 'C:\TEMP' (if unspecified, source directory is used)
-p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y
-r Reorient image to nearest orthogonal: Y,N
-s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N
-v Convert every image in the directory: Y,N = Y
-x Reorient and crop 3D NIfTI images: Y,N = N
You can also set defaults by editing DCM2NII.INI
EXAMPLE: dcm2nii -a y -o C:\TEMP C:\DICOM\input1.par CEDU>> dpabi
Warning: File: DPARSFA_run.m Line: 680 Column: 66
The temporary variable SliceOrder will be cleared at the beginning of each iteration of
the parfor loop.
Any value assigned to it before the loop will be lost. If SliceOrder is used before it
is assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 935 Column: 83
The temporary variable RefFile will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If RefFile is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 2683 Column: 24
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: File: DPARSFA_run.m Line: 4389 Column: 32
The temporary variable DirImg will be cleared at the beginning of each iteration of the
parfor loop.
Any value assigned to it before the loop will be lost. If DirImg is used before it is
assigned in the parfor loop, a runtime error will occur.
See Parallel for Loops in MATLAB, "Temporary Variables".
> In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Warning: Directory already exists.
> In DPARSFA_run>(parfor body) at 215
In parallel_function at 472
In DPARSFA_run at 213
In DPARSF_run at 113
In DPARSF>pushbuttonRun_Callback at 1152
In gui_mainfcn at 95
In DPARSF at 52
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.ini
reading preferences file DCM2NII.INI
0 C:\Users\Hugo\Documents\Summer 2016 STTP\DPABI_V2.1_160415\DPARSF\dcm2nii\dcm2nii.exe ERROR: unable to find 2016 STTP\ProcessingDemoData\FunImg\Sub_003 C:\Users\Hugo\Documents\Summer 2016 STTP\ProcessingDemoData\FunRaw\Sub_003\0000001.dcm
Either drag and drop or specify command line options:
dcm2nii <options> <sourcenames>
OPTIONS:
-a Anonymize [remove identifying information]: Y,N = Y
-b load settings from specified inifile, e.g. '-b C:\set\t1.ini'
-c Collapse input folders: Y,N = N
-d Date in filename [filename.dcm -> 20061230122032.nii]: Y,N = Y
-e events (series/acq) in filename [filename.dcm -> s002a003.nii]: Y,N = Y
-f Source filename [e.g. filename.par -> filename.nii]: Y,N = N
-g gzip output, filename.nii.gz [ignored if '-n n']: Y,N = N
-i ID in filename [filename.dcm -> johndoe.nii]: Y,N = Y
-n output .nii file [if no, create .hdr/.img pair]: Y,N = Y
-o Output Directory, e.g. 'C:\TEMP' (if unspecified, source directory is used)
-p Protocol in filename [filename.dcm -> TFE_T1.nii]: Y,N = Y
-r Reorient image to nearest orthogonal: Y,N
-s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']: Y,N = N
-v Convert every image in the directory: Y,N = Y
-x Reorient and crop 3D NIfTI images: Y,N = N
You can also set defaults by editing DCM2NII.INI
EXAMPLE: dcm2nii -a y -o C:\TEMP C:\DICOM\input1.par CEDU>> dpabi
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