下面黑体是matlab中红色显示的错误,仅仅是因为内存不足吗?有没有其他错误?
如果转移到其他机器上继续做,是不是需要把所有文件夹拷贝走?
>> DPARSF
Welcome: Administrator, 2013-10-22 20:48
Data Processing Assistant for Resting-State fMRI (DPARSF) Basic Edition.
Release=V2.3_130615
Copyright(c) 2009; GNU GENERAL PUBLIC LICENSE
The Nathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962; Child Mind Institute, 445 Park Avenue, New York, NY 10022; The Phyllis Green and Randolph Cowen Institute for Pediatric Neuroscience, New York University Child Study Center, New York, NY 10016
State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, China
Mail to Author: YAN Chao-Gan
http://www.restfmri.net
-----------------------------------------------------------
Citing Information:
If you think DPARSF is useful for your work, citing it in your paper would be greatly appreciated.
Something like "... The preprocessing was carried out by using Data Processing Assistant for Resting-State fMRI (DPARSF) (Yan & Zang, 2010, http://www.restfmri.net) which is based on Statistical Parametric Mapping (SPM8) (http://www.fil.ion.ucl.ac.uk/spm) and Resting-State fMRI Data Analysis Toolkit (REST, Song et al., 2011. http://www.restfmri.net)..."
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013; Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
Removing First 10Time Points:001 OK
Slice Timing Setup:001 OK
Warning: Run spm_jobman('initcfg'); beforehand
> In spm_jobman at 107
In DPARSF_run at 360
In DPARSF>pushbuttonRun_Callback at 996
In gui_mainfcn at 96
In DPARSF at 48
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Slice Timing'
SPM8: spm_slice_timing (v4310) 20:50:55 - 22/10/2013
========================================================================
Your TR is 3.0
Done 'Slice Timing'
Done
Realign Setup:001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Realign: Estimate & Reslice'
Done 'Realign: Estimate & Reslice'
Done
Moving Realign Parameters:001 OK
Normalize Setup:001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Normalise: Estimate & Write'
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
iteration 1: FWHM = 23.29 Var = 62.4387
iteration 2: FWHM = 16.74 Var = 6.98414
iteration 3: FWHM = 15.5 Var = 4.0396
iteration 4: FWHM = 14.85 Var = 2.99651
iteration 5: FWHM = 14.48 Var = 2.52109
iteration 6: FWHM = 14.23 Var = 2.25962
iteration 7: FWHM = 14.07 Var = 2.10201
iteration 8: FWHM = 13.96 Var = 2.00332
iteration 9: FWHM = 13.9 Var = 1.94523
iteration 10: FWHM = 13.86 Var = 1.9096
iteration 11: FWHM = 13.83 Var = 1.8875
iteration 12: FWHM = 13.81 Var = 1.87327
iteration 13: FWHM = 13.8 Var = 1.85809
iteration 14: FWHM = 13.8 Var = 1.8574
iteration 15: FWHM = 13.78 Var = 1.8462
iteration 16: FWHM = 13.78 Var = 1.84438
Saving Parameters..
Done 'Normalise: Estimate & Write'
Done
Moving Normalized Files:001 OK
Generating the pictures for checking normalization: 001 OK
Smooth Setup:001 OK
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Smooth'
Done 'Smooth'
Done
Moving Smoothed Files:001 OK
Warning: Invalid escape sequence appears in format string. See help sprintf for
valid escape sequences.
> In rest_detrend at 24
In DPARSF_run at 988
In DPARSF>pushbuttonRun_Callback at 996
In gui_mainfcn at 96
In DPARSF at 48
Removing the linear trend: D: rails
Read 3D EPI functional images: "D:\trails\FunImgNormalizedSmoothed\001".......................................
??? Error using ==> ctranspose
Out of memory. Type HELP MEMORY for your options.
Error in ==> rest_detrend at 40
AllVolume=reshape(AllVolume,[],nDimTimePoint)';
Error in ==> DPARSF_run at 988
rest_detrend([AutoDataProcessParameter.DataProcessDir,filesep,FunImgDir,filesep,AutoDataProcessParameter.SubjectID{i}],
'_detrend');
Error in ==> DPARSF>pushbuttonRun_Callback at 996
[Error]=DPARSF_run(handles.Cfg);
Error in ==> gui_mainfcn at 96
feval(varargin{:});
Error in ==> DPARSF at 48
gui_mainfcn(gui_State, varargin{:});
??? Error while evaluating uicontrol Callback
Attachment | Size |
---|---|
1.JPG | 71.04 KB |
Submitted by ZHANG_RESTadmin on Tue, 10/22/2013 - 23:39 Permalink
Re: DPARSF处理中断,matlab提示如下
从错误信息来看的确是内存不足了。
而且,内存主要是在detrend时不足的,这也可以理解,因为detrend需要的内存比其他时候要大。
你换机器的时候,可以拷走所有的文件,我看你smooth已经做完了。
Submitted by water on Wed, 10/23/2013 - 08:54 Permalink
Re: DPARSF处理中断,matlab提示如下
那哪个文件夹里是最终处理的图像,就是说继续做统计的话,用哪个文件夹里的图像?还是都要用?
Submitted by ZHANG_RESTadmin on Sat, 11/02/2013 - 01:52 Permalink
Re: DPARSF处理中断,matlab提示如下
可以从做完smooth以后继续做。但是,如果后面还要做nuisance regression时,还需要前面的结果。