June 2010

imput image format for REST v1.4 and DPARSF

Submitted by mcl45 on Wed, 06/16/2010 - 01:30

Dear Sir,

I would like to start using REST v1.4 and DPARSF. Could you please guide me through these two issues:

1. In MATLAB, if my original path setting is for spm8 instead of spm5, would REST and DPARSF work, or do I need to change the priority to spm5?

2. The input fMRI image files that I have is 4D .nii image.  What is the appropriate input image format for REST and DPARSF, and how should they be organized?

Thank you very much in advance.

kind regards,
Meng-chuan

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Resting-state fMRI topics

Fwd: What's new for '+"resting" +"fMRI"' in PubMed

Submitted by admin on Sat, 06/12/2010 - 23:00

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dparsf

Submitted by johnsonzhj on Fri, 06/11/2010 - 19:18

Dear Chaogan,

       I want to used the Dparsf to process the domenstration data you released recently, but I come across with the problem blow.
       What is wrong with this? Thank you.

Best,

Johnsonzhj

Converting 128/128  1
0000001.dcm->20070930_0905050000001t1mpragesagSub003s010a1001E.nii
GZip 20070930_0905050000001t1mpragesagSub003s010a1001E.nii

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Resting-state fMRI topics

用DPARSF做slice timing时报错

Submitted by ghhh on Thu, 06/10/2010 - 09:57

严老师您好，
我们最近开始进行脑静息态研究，经验不足，目前使用软件（DPARSF，SPM5 Updates）在MATLAB 7.30（R2006b vista版本）平台上应用DPARSF对自己采集的患者数据进行预处理，但是在进行到slice timing时出现了错误，下面一张图是我用DPARSF进行数据预处理的设置。我们使用的是西门子3T磁共振，图像间隔采集。

Slice Timing Setup:sub-2 OK
Warning: In the directory "F:\soft ware\spm5 2010\spm5-update", spm_unlink.mexw32 now shadows spm_unlink.dll.
 Please see the MATLAB 7.1 Release Notes.
> In spm_config at 215

Forums: 
Resting-state fMRI topics

Fwd: What's new for '+"resting" +"fMRI"' in PubMed

Submitted by admin on Mon, 06/07/2010 - 09:58

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at the U.S. National Library of Medicine (NLM).

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Resting-state fMRI topics

Resting-state fMRI conference

Submitted by ZangYF on Fri, 06/04/2010 - 11:28

The Second Biennial International Conference on Resting State Connectivity is calling for abstracts. The deadline was moved to July 2.

The letter says, "We are currently working with sponsors to provide a very limited number of $500 travel stipend awards to graduate students and postdocs. These will be awarded to students and/or postdocs who submit first-author abstracts considered by the reviewers to be the best. The number of awards will depend on sponsorship."

Forums: 
Resting-state fMRI topics

How to install REST on Solaris 10

Submitted by wayne on Fri, 06/04/2010 - 10:38

您好
請問在Solaris環境下如何安裝呢?
按照手冊安裝會出問題
system: Solaris SPARC 10
Matlab version: 7.0.0.19901 (R14)
SPM version: SPM2
REST version: REST2007V1.3_100201

一開啟就會出現
Warning: Function call fc_gui invokes inexact match /usr/matlab7/softwares/REST2007V1.3_100201/FC_GUI.M.

> In REST>StartFunctionalConnectivity at 389
  In REST at 118
執行detrend, filter,...等都會有問題
附加檔是detrend後產生的回報

萬分感激!!!

Forums: 
Resting-state fMRI topics