problem in overlay t image
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严老师,您好:
我在win 7下使用的是MATLAB 7.9.0, DPARSFv1.0 100201, REST V1.4 100426, SPM5。有5个被试,DPARSF设置是
结果在做到第五个被试的Realign时报错
Printing Graphics Windows to
E:\Analysis\FunImg\spm_2010Apr29.ps
--------------------------
Running "Realign: Estimate & Reslice"
运行环境 Win XP(SP2)
Matlab 7.01(R14)
SPM2
REST 版本 Version: 1.4, Release: 20100426
错误信息
Welcome: Administrator, 20100428_2042
REST Version: 1.4, Release: 20100426
??? Error using ==> copyfile
Cannot find the source file or directory specified.
Dear all:
I did the functional connectivity analysis by REST v1.3 and I found that there were no so called "FCmap" in the results directory and fold. I used SPM statistical T-MAPs derived from GIFT toolbox as ROIs and I also finisehd the DPARSF preprocessing except ReHo, ALFF, etc. Can anybody tell me what's going wrong about this errors?
Thank you.
Dr. Lai
??? Error using ==> cd
Cannot CD to G:temp (Name is nonexistent or not a directory).
Error in ==> tempdir at 31
curr_dir = cd(tmp_dir);
Error in ==> rest_misc at 119
dirFCTemp =dir(fullfile(tempdir, 'fc_*'));
Error in ==> rest>QuitAll at 393
rest_misc( 'ClearTempFiles');
Error in ==> rest at 34
QuitAll;
输入:rest以后出现这样的情况,请问有解决方案吗?
我的操作系统是win7 32位的,matlab 2009B
Dear All!
REST_V1.4_100420 has been intensely tested in MATLAB7.3 with SPM5. However, there appears a reading and writing bug of compatibility with SPM8.
Now, this problem has been solved in REST_V1.4_100426.
Please download the latest release and use it, then this problem will be solved automatically after restarting MATLAB. For an alternative way, you can run rest_Fix_Read_Write_Error.m in REST_V1.4_100426 manually and do not need to restart MATLAB.
我利用 DPARSF 来预处理我的功能像数据,每个患者有 3 个 session,因此我将 FunRaw 里面设置为 subject001_1、subject001_2、subject001_3...,而T1Raw里面相应的放上 3 个 subject001 的 3D 结构像、然后 subject002...
前面的步骤运行顺利,但是到 smooth 的时候,报了错,并且文件夹中未生成用于检验 normalization 效果的图像文件夹。
系统为win xp,spm8,刚更新了DPARSF 和 REST1.4,报错信息如下:
Resting-State fMRI Data Analysis Toolkit (REST) is a convenient toolkit to calculate Functional Connectivity (FC), Regional Homogeneity (ReHo), Amplitude of Low-Frequency Fluctuation (ALFF), Fractional ALFF (fALFF), Gragner causality and perform statistical analysis. You also can use REST to view your data, perform Monte Carlo simulation similar to AlphaSim in AFNI, calculate your images, regress out covariates, extract ROI time courses, reslice images, and sort DICOM files. Download a MULTIMEDIA COURSE would be helpful for knowing more about how to use this software. Add REST's directory to MATLAB's path and enter "REST" in the command window of MATLAB to enjoy it.
The latest release is REST_V1.4_100426. |
New features of REST V1.4 release 100426:
1. Fixed a reading and writing bug of compatibility with SPM8.
New features of REST V1.4 release 100420:
1. In previous release of REST, there is a simple procedure for removing linear trend in bandpass filter (as fourier_filter.c in AFNI) regardless if detrend calculation has been performed before bandpass filter or not. Now this simple procedure for removing linear trend in bandpass filter has been canceled.
2. In previous release of REST, bandpass filter (or ALFF and fALFF) determined the frequency band a little smaller than the real wanted frequency band. For example, if the wanted band is 0.01-0.08, TR=2S, Time points=240, then the real wanted frequency band is 0.0104-0.07917, but the previous release of REST will determined to 0.0083-0.07708. This bug has been fixed in REST V1.4 release 100420. These two modifications will make the results obtained by REST V1.4 slightly different from those obtained by previous version of REST, please be careful.
3. REST Statistical Analysis: Statistical analysis module has been added -- One-Sample T-Test, Two-Sample T-Test, Paired T-Test, ANCOVA, and Correlation Analysis. The operations are much easier than the operations in SPM. Especially, the covariate images can be added into statistical analysis (such as adding GM volume images as covariates in statistical analysis). (by YAN Chao-Gan)
4. REST Slice Viewer: Fixed a bug in displaying overlay with different bounding box from those of underlay. For example, if you use ch2.nii as underlay, but the bounding box of overlay is not [-90 -126 -72;90 90 108] (e.g. if you use SPM’s default: [-78 -112 -50; 78 76 85]), then REST Slice Viewer will display in a wrong way. Please re-display your image with REST V1.4 if your data with a bounding box different from [-90 -126 -72;90 90 108]. (by DONG Zhang-Ye)
5. REST-GCA: The Beta 1.0 release 100201 of REST-GCA supports only the signed-path coefficient maps at a fixed order=1 condition. In order to implement a more general GCA program, we updated REST-GCA. The updated version integrates two algorithms: the coefficient-based GCA and the residual-based GCA. The updated version supports any order. Please refer to http://www.restfmri.net/forum/REST-GCA for more details. (by ZANG Zhen-Xiang)